EnhancerDB
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  3. rs28460665[chr1:203475285]
Enhancers that have rs28460665[chr1:203475285]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 203471885 203497995 enh12556
Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs28460665[chr1:203475285]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 203474819 203476480 ZNF274 GTRD no Cervix (HeLa-S3) 21368984
chr1 203475060 203476643 ZNF143 GTRD no Epithelial (MCF-7) 21368985
chr1 203475178 203476125 ZNF143 GTRD no Epithelial (MCF-7) 21368986
chr1 203475268 203475289 IRF1 JASPAR yes 34632804
chr1 203475269 203475290 IRF1 JASPAR yes 34632805
chr1 203475270 203475285 FOXP1 JASPAR yes 34632806
chr1 203475270 203475291 IRF1 JASPAR yes 34632807
chr1 203475274 203475295 IRF1 JASPAR yes 34632808
chr1 203475275 203475290 FOXP1 JASPAR yes 34632809
chr1 203475275 203475296 IRF1 JASPAR yes 34632810
chr1 203475275 203475972 TCF7L2 GTRD no Colon (HCT116) 21368987
chr1 203475276 203475297 IRF1 JASPAR yes 34632811
chr1 203475277 203475292 FOXP1 JASPAR yes 34632812
chr1 203475279 203475294 FOXP1 JASPAR yes 34632813
chr1 203475280 203475295 FOXP1 JASPAR yes 34632814
chr1 203475281 203475296 FOXP1 JASPAR yes 34632815
chr1 203475282 203475297 FOXP1 JASPAR yes 34632816
chr1 203475283 203475298 FOXP1 JASPAR yes 34632817
chr1 203475284 203475299 FOXP1 JASPAR yes 34632818
Genes associated with rs28460665[chr1:203475285], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More