EnhancerDB
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  3. rs28479876[chr19:6087009]
Enhancers that have rs28479876[chr19:6087009]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 6084063 6113078 enh17886
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs28479876[chr19:6087009]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 6085947 6089124 ZBTB33 GTRD no Brain (SK-N-SH) 21844427
chr19 6085947 6089124 ZBTB33 GTRD no Brain (SK-N-SH) 108376892
chr19 6086419 6088727 ZNF274 GTRD no Bone Marrow (K562) 21844428
chr19 6086419 6088727 ZNF274 GTRD no Bone Marrow (K562) 108376893
chr19 6086509 6089323 ZNF274 GTRD no Blood (GM12878) 108376894
chr19 6086532 6088439 ZNF274 GTRD no Blood (GM12878) 108376895
chr19 6086559 6089269 ZNF274 GTRD no Blood (GM12878) 108376896
chr19 6086608 6089118 ZNF274 GTRD no Blood (GM12878) 108376897
chr19 6086633 6089119 ZNF274 GTRD no Bone Marrow (K562) 21844429
chr19 6086633 6089119 ZNF274 GTRD no Bone Marrow (K562) 108376898
chr19 6086701 6089372 TCF7L2 GTRD no Colon (HCT116) 21844430
chr19 6086701 6089372 TCF7L2 GTRD no Colon (HCT116) 108376899
chr19 6086719 6089312 ZNF274 GTRD no Bone Marrow (K562) 21844431
chr19 6086719 6089312 ZNF274 GTRD no Bone Marrow (K562) 108376900
chr19 6086772 6088385 ZNF274 GTRD no Blood (GM12878) 108376901
chr19 6086790 6089425 ZNF274 GTRD no Blood (GM12878) 108376902
chr19 6086822 6089144 ZNF274 GTRD no Blood (GM12878) 108376903
chr19 6086849 6088393 ZNF274 GTRD no Liver (HepG2) 21844432
chr19 6086849 6088393 ZNF274 GTRD no Liver (HepG2) 108376904
chr19 6086885 6088350 ZNF274 GTRD no Blood (GM12878) 108376905
chr19 6086902 6088637 ZNF274 GTRD no Blood (GM12878) 108376906
chr19 6086933 6088445 ZNF274 GTRD no Bone Marrow (K562) 21844433
chr19 6086933 6088445 ZNF274 GTRD no Bone Marrow (K562) 108376907
chr19 6086943 6089254 ZNF274 GTRD no Bone Marrow (K562) 21844434
chr19 6086943 6089254 ZNF274 GTRD no Bone Marrow (K562) 108376908
chr19 6086993 6088342 ZNF274 GTRD no Bone Marrow (K562) 21844435
chr19 6086993 6088342 ZNF274 GTRD no Bone Marrow (K562) 108376909
chr19 6086999 6087020 IRF1 JASPAR yes 112255250
chr19 6087004 6087019 FOXP1 JASPAR yes 112255251
chr19 6087008 6087023 LEF1 JASPAR yes 112255252
Genes associated with rs28479876[chr19:6087009], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More