EnhancerDB
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  3. rs28541555[chr1:1618675]
Enhancers that have rs28541555[chr1:1618675]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 1607365 1622353 enh2
Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Bone (Osteoblast) Thyroid Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Liver (HepG2) Prostate (RWPE1)
Transcript factors that have rs28541555[chr1:1618675]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 1618663 1618676 EOMES JASPAR yes 26199257
chr1 1618665 1618675 TBR1 JASPAR yes 26199258
chr1 1618665 1618676 TBX2 JASPAR yes 26199259
chr1 1618666 1618676 TBX21 JASPAR yes 26199260
chr1 1618667 1618675 MGA JASPAR yes 26199261
chr1 1618667 1618675 TBX15 JASPAR yes 26199262
chr1 1618667 1618675 TBX1 JASPAR yes 26199263
chr1 1618667 1618675 TBX4 JASPAR yes 26199264
chr1 1618667 1618675 TBX5 JASPAR yes 26199265
chr1 1618667 1618676 ZEB1 JASPAR yes 26199266
chr1 1618668 1618678 ID4 JASPAR yes 26199267
chr1 1618668 1618678 TCF3 JASPAR yes 26199268
chr1 1618668 1618678 TCF4 JASPAR yes 26199269
chr1 1618669 1618678 SNAI2 JASPAR yes 26199270
chr1 1618670 1618675 USF2 TRANSFAC yes 26199271
Genes associated with rs28541555[chr1:1618675], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More