EnhancerDB
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  3. rs28597813[chr1:203488364]
Enhancers that have rs28597813[chr1:203488364]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 203471885 203497995 enh12556
Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs28597813[chr1:203488364]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 203486453 203488469 ZNF143 GTRD no Epithelial (MCF-7) 21369131
chr1 203486461 203488504 ZNF143 GTRD no Epithelial (MCF-7) 21369132
chr1 203486475 203488890 ZNF143 GTRD no Epithelial (MCF-7) 21369133
chr1 203486491 203488398 ZNF143 GTRD no Epithelial (MCF-7) 21369134
chr1 203486535 203488632 ZNF143 GTRD no Epithelial (MCF-7) 21369135
chr1 203486536 203488874 ZNF143 GTRD no Epithelial (MCF-7) 21369136
chr1 203486545 203488921 ZNF143 GTRD no Epithelial (MCF-7) 21369137
chr1 203486562 203488618 ZNF143 GTRD no Epithelial (MCF-7) 21369138
chr1 203486657 203488451 ZNF274 GTRD no Cervix (HeLa-S3) 21369144
chr1 203486657 203488644 ZNF274 GTRD no Cervix (HeLa-S3) 21369145
chr1 203486710 203488890 TCF7L2 GTRD no Colon (HCT116) 21369146
chr1 203486722 203488615 ZNF143 GTRD no Epithelial (MCF-7) 21369147
chr1 203486771 203488661 ZNF143 GTRD no Epithelial (MCF-7) 21369148
chr1 203486810 203488515 ZNF143 GTRD no Epithelial (MCF-7) 21369149
chr1 203486812 203488679 ZNF143 GTRD no Epithelial (MCF-7) 21369150
chr1 203486864 203488639 ZNF143 GTRD no Epithelial (MCF-7) 21369151
chr1 203486884 203488425 ZNF143 GTRD no Epithelial (MCF-7) 21369152
chr1 203486921 203488654 ZNF143 GTRD no Epithelial (MCF-7) 21369154
chr1 203486949 203488784 ZNF143 GTRD no Epithelial (MCF-7) 21369155
chr1 203486997 203488379 ZNF143 GTRD no Epithelial (MCF-7) 21369157
chr1 203487061 203488505 TCF7L2 GTRD no Colon (HCT116) 21369160
chr1 203487073 203488480 ZNF143 GTRD no Epithelial (MCF-7) 21369161
chr1 203487077 203488475 ZNF143 GTRD no Epithelial (MCF-7) 21369162
chr1 203487090 203488378 ZNF274 GTRD no Cervix (HeLa-S3) 21369163
chr1 203487121 203488548 TCF7L2 GTRD no Colon (HCT116) 21369165
chr1 203487122 203488635 ZNF143 GTRD no Epithelial (MCF-7) 21369166
chr1 203487149 203488678 TCF7L2 GTRD no Colon (HCT116) 21369167
chr1 203487209 203488485 CTCF GTRD no Spleen 21369172
chr1 203487274 203488415 ZNF143 GTRD no Epithelial (MCF-7) 21369179
chr1 203488275 203488519 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21369197
chr1 203488316 203488425 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21369198
chr1 203488361 203488366 GATA1 TRANSFAC yes 34634742
Genes associated with rs28597813[chr1:203488364], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More