EnhancerDB
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  3. rs28597956[chr17:41527212]
Enhancers that have rs28597956[chr17:41527212]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 41518125 41539515 enh17169
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Kidney Prostate (RWPE1) Cervix (HeLa-S3) Esophagus Astrocyte Lung (A549) Stomach Placenta Thyroid Adrenal Lung (PC-9) Pancreas Spleen Muscle (Myotube) Uterus Heart
Transcript factors that have rs28597956[chr17:41527212]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 41526227 41528797 ZNF143 GTRD no Epithelial (MCF-7) 21760440
chr17 41526271 41528845 ZNF143 GTRD no Epithelial (MCF-7) 21760441
chr17 41526422 41528904 ZNF143 GTRD no Epithelial (MCF-7) 21760443
chr17 41526590 41528944 ZNF143 GTRD no Epithelial (MCF-7) 21760446
chr17 41526648 41528930 ZNF143 GTRD no Epithelial (MCF-7) 21760447
chr17 41526659 41528889 ZNF143 GTRD no Epithelial (MCF-7) 21760448
chr17 41526714 41528825 ZNF274 GTRD no Liver (HepG2) 21760449
chr17 41526734 41528838 ZNF274 GTRD no Cervix (HeLa-S3) 21760450
chr17 41526767 41528900 ZNF143 GTRD no Epithelial (MCF-7) 21760451
chr17 41526777 41527321 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21760453
chr17 41526802 41527378 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21760455
chr17 41526836 41527340 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21760457
chr17 41526852 41527262 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21760458
chr17 41526878 41527278 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21760460
chr17 41526889 41527329 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21760461
chr17 41526926 41527316 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21760464
chr17 41526936 41527316 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21760465
chr17 41526940 41527240 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21760466
chr17 41526947 41527217 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21760467
chr17 41526963 41527227 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21760469
chr17 41526970 41527246 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21760471
chr17 41526971 41527247 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21760472
chr17 41527001 41527231 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21760473
chr17 41527015 41528594 ZNF143 GTRD no Epithelial (MCF-7) 21760475
chr17 41527017 41527257 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21760477
chr17 41527025 41527225 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21760481
chr17 41527034 41528918 ZNF274 GTRD no Liver (HepG2) 21760482
chr17 41527037 41528575 ZNF143 GTRD no Epithelial (MCF-7) 21760483
chr17 41527054 41527700 ZNF143 GTRD no Epithelial (MCF-7) 21760484
chr17 41527056 41528802 ZNF143 GTRD no Epithelial (MCF-7) 21760485
chr17 41527057 41528600 ZNF143 GTRD no Epithelial (MCF-7) 21760486
chr17 41527077 41528891 ZNF143 GTRD no Epithelial (MCF-7) 21760487
chr17 41527127 41528104 ZBTB33 GTRD no Lung (A549) 21760488
chr17 41527146 41528807 ZNF143 GTRD no Epithelial (MCF-7) 21760489
chr17 41527168 41528819 ZNF274 GTRD no Liver (HepG2) 21760490
chr17 41527190 41528700 ZNF143 GTRD no Epithelial (MCF-7) 21760491
chr17 41527194 41528899 ZNF143 GTRD no Epithelial (MCF-7) 21760492
chr17 41527210 41527223 POU2F2 JASPAR yes 54348167
chr17 41527211 41527215 YY1 TRANSFAC yes 54348168
chr17 41527211 41527223 POU3F1 JASPAR yes 54348169
chr17 41527211 41527223 POU3F2 JASPAR yes 54348170
chr17 41527211 41527224 POU3F3 JASPAR yes 54348171
chr17 41527212 41527224 POU2F1 JASPAR yes 54348172
Genes associated with rs28597956[chr17:41527212], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr17 40610862 40674629 + ATP6V0A1 ENSG00000033627.10 40610862 852583 Breast 0.355078 15862