EnhancerDB
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  3. rs28620013[chr1:225646623]
Enhancers that have rs28620013[chr1:225646623]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 225626185 225658051 enh950
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs28620013[chr1:225646623]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 225646583 225647318 ZBTB33 GTRD no Brain (SK-N-SH) 21384800
chr1 225646617 225647220 ZBTB33 GTRD no Brain (SK-N-SH) 21384801
chr1 225646619 225646629 RORA JASPAR yes 35743005
chr1 225646620 225646631 ESRRA JASPAR yes 35743006
chr1 225646620 225646631 ESRRB JASPAR yes 35743007
chr1 225646620 225646633 NR2F1 JASPAR yes 35743008
chr1 225646622 225646630 NR4A2 JASPAR yes 35743009
Genes associated with rs28620013[chr1:225646623], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More