EnhancerDB
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Enhancers that have rs28620458[chr1:8963855]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 8954605 8983075 enh11478
Brain (SK-N-MC) Astrocyte Colon (HCT116) Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Breast Muscle (Myotube) Liver (HepG2) Prostate (RWPE1)
Transcript factors that have rs28620458[chr1:8963855]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 8963782 8964438 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 107801992
chr1 8963842 8963857 RUNX2 JASPAR yes 26606648
chr1 8963849 8963859 SREBF1 JASPAR yes 26606649
chr1 8963850 8963858 MGA JASPAR yes 26606650
Genes associated with rs28620458[chr1:8963855], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More