EnhancerDB
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  3. rs28680641[chr1:203475539]
Enhancers that have rs28680641[chr1:203475539]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 203471885 203497995 enh12556
Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs28680641[chr1:203475539]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 203474819 203476480 ZNF274 GTRD no Cervix (HeLa-S3) 21368984
chr1 203475060 203476643 ZNF143 GTRD no Epithelial (MCF-7) 21368985
chr1 203475178 203476125 ZNF143 GTRD no Epithelial (MCF-7) 21368986
chr1 203475275 203475972 TCF7L2 GTRD no Colon (HCT116) 21368987
chr1 203475303 203476222 ZNF143 GTRD no Epithelial (MCF-7) 21368988
chr1 203475327 203476271 ZNF143 GTRD no Epithelial (MCF-7) 21368989
chr1 203475505 203476192 ZNF143 GTRD no Epithelial (MCF-7) 21368990
chr1 203475530 203475545 ZIC3 JASPAR yes 34632858
chr1 203475538 203476087 TCF7L2 GTRD no Colon (HCT116) 21368991
Genes associated with rs28680641[chr1:203475539], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More