EnhancerDB
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  3. rs28687442[chr1:19258539]
Enhancers that have rs28687442[chr1:19258539]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 19252691 19280920 enh11566
Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs28687442[chr1:19258539]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 19258532 19258539 SP1 TRANSFAC yes 27162582
chr1 19258537 19258549 HES5 JASPAR yes 27162583
chr1 19258537 19258549 HES7 JASPAR yes 27162584
chr1 19258538 19258548 BHLHE40 JASPAR yes 27162585
chr1 19258538 19258548 CLOCK JASPAR yes 27162586
chr1 19258538 19258548 HEY1 JASPAR yes 27162587
chr1 19258538 19258548 HEY2 JASPAR yes 27162588
chr1 19258538 19258548 MAX JASPAR yes 27162589
chr1 19258538 19258548 MLXIPL JASPAR yes 27162590
chr1 19258538 19258548 MLX JASPAR yes 27162591
chr1 19258538 19258548 MNT JASPAR yes 27162592
chr1 19258538 19258548 TFE3 JASPAR yes 27162593
chr1 19258538 19258548 TFEB JASPAR yes 27162594
chr1 19258539 19258549 MAX JASPAR yes 27162595
Genes associated with rs28687442[chr1:19258539], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More