EnhancerDB
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  3. rs28725464[chr1:19275059]
Enhancers that have rs28725464[chr1:19275059]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 19252691 19280920 enh11566
Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 19274997 19275345 vista596
VISTA
Transcript factors that have rs28725464[chr1:19275059]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 19274191 19275379 TCF7L2 GTRD no Colon (HCT116) 107802287
chr1 19275048 19275059 SPDEF JASPAR yes 27165024
chr1 19275048 19275059 SPDEF JASPAR yes 118242642
Genes associated with rs28725464[chr1:19275059], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More