EnhancerDB
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  3. rs28740871[chr1:19274897]
Enhancers that have rs28740871[chr1:19274897]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 19252691 19280920 enh11566
Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs28740871[chr1:19274897]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 19274191 19275379 TCF7L2 GTRD no Colon (HCT116) 107802287
chr1 19274893 19274900 USF1 JASPAR yes 27165009
chr1 19274893 19274903 MAX JASPAR yes 27165010
chr1 19274894 19274899 MYC TRANSFAC yes 27165011
chr1 19274894 19274899 USF1 TRANSFAC yes 27165012
chr1 19274894 19274899 USF2 TRANSFAC yes 27165013
chr1 19274894 19274901 USF1 JASPAR yes 27165014
chr1 19274895 19274915 PPARG JASPAR yes 27165015
chr1 19274896 19274905 HIC2 JASPAR yes 27165016
Genes associated with rs28740871[chr1:19274897], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More