EnhancerDB
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  3. rs28823139[chr1:201670549]
Enhancers that have rs28823139[chr1:201670549]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 201670008 201708415 enh12526
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Breast Muscle (Myoblast) Spleen Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs28823139[chr1:201670549]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 201670538 201670553 FOXP1 JASPAR yes 34521714
chr1 201670538 201670559 IRF1 JASPAR yes 34521715
chr1 201670540 201670552 FOXC2 JASPAR yes 34521717
chr1 201670541 201670562 IRF1 JASPAR yes 34521718
chr1 201670542 201670557 FOXP1 JASPAR yes 34521719
chr1 201670544 201670559 FOXP1 JASPAR yes 34521720
chr1 201670544 201670559 MEF2C JASPAR yes 34521721
chr1 201670545 201670566 IRF1 JASPAR yes 34521722
chr1 201670546 201670561 FOXP1 JASPAR yes 34521723
chr1 201670547 201670568 IRF1 JASPAR yes 34521724
chr1 201670548 201670554 TBP TRANSFAC yes 34521725
Genes associated with rs28823139[chr1:201670549], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More