EnhancerDB
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  3. rs2885009[chr1:201428307]
Enhancers that have rs2885009[chr1:201428307]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 201414985 201433510 enh875
Brain (SK-N-MC) Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs2885009[chr1:201428307]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 201427850 201428889 ZNF143 GTRD no Epithelial (MCF-7) 21364079
chr1 201427927 201428338 ZNF274 GTRD no Cervix (HeLa-S3) 21364080
chr1 201427963 201428477 TCF7L2 GTRD no Colon (HCT116) 21364081
chr1 201428288 201428308 RREB1 JASPAR yes 34496054
chr1 201428290 201428310 RREB1 JASPAR yes 34496055
chr1 201428295 201428315 RREB1 JASPAR yes 34496056
chr1 201428296 201428311 RUNX2 JASPAR yes 34496057
Genes associated with rs2885009[chr1:201428307], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More