EnhancerDB
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  3. rs2885173[chr1:25050549]
Enhancers that have rs2885173[chr1:25050549]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 25026945 25066186 enh139
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs2885173[chr1:25050549]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 25049960 25051595 ZNF274 GTRD no Blood (GM12878) 107802464
chr1 25050532 25050553 IRF1 JASPAR yes 27523319
chr1 25050538 25050549 CDX2 JASPAR yes 27523331
chr1 25050539 25050551 MEF2A JASPAR yes 27523332
chr1 25050539 25050551 MEF2B JASPAR yes 27523333
chr1 25050539 25050551 MEF2D JASPAR yes 27523334
chr1 25050547 25050551 YY1 TRANSFAC yes 27523335
Genes associated with rs2885173[chr1:25050549], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 25071848 25170815 + CLIC4 ENSG00000169504.10 25071848 21299 Heart 0.243181 337