EnhancerDB
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  3. rs2896828[chr1:223898685]
Enhancers that have rs2896828[chr1:223898685]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 223886085 223931782 enh12712
Bone Marrow (K562) Brain (SK-N-MC) Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs2896828[chr1:223898685]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 223898672 223898687 SCRT1 JASPAR yes 35671052
chr1 223898676 223898685 SNAI2 JASPAR yes 35671053
chr1 223898676 223898686 FIGLA JASPAR yes 35671054
chr1 223898676 223898686 ID4 JASPAR yes 35671055
chr1 223898676 223898686 TCF3 JASPAR yes 35671056
chr1 223898676 223898686 TCF4 JASPAR yes 35671057
chr1 223898678 223898687 ZEB1 JASPAR yes 35671058
Genes associated with rs2896828[chr1:223898685], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More