EnhancerDB
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  3. rs2945390[chr17:25877123]
Enhancers that have rs2945390[chr17:25877123]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 25838865 25883455 enh17064
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673)
Transcript factors that have rs2945390[chr17:25877123]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 25877121 25877131 SREBF1 JASPAR yes 53644326
chr17 25877121 25877131 SREBF2 JASPAR yes 53644327
chr17 25877121 25877132 TBX20 JASPAR yes 53644328
chr17 25877122 25877130 MGA JASPAR yes 53644329
Genes associated with rs2945390[chr17:25877123], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More