EnhancerDB
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  3. rs2945406[chr17:25849868]
Enhancers that have rs2945406[chr17:25849868]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 25838865 25883455 enh17064
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673)
Transcript factors that have rs2945406[chr17:25849868]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 25849859 25849871 GLI2 JASPAR yes 53640550
chr17 25849867 25849882 TFAP2C JASPAR yes 53640551
chr17 25849868 25849872 NFE TRANSFAC yes 53640552
Genes associated with rs2945406[chr17:25849868], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More