EnhancerDB
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  3. rs2990220[chr1:155190254]
Enhancers that have rs2990220[chr1:155190254]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 155186185 155200282 enh647
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Prostate (RWPE1) Blood (T-cell) Bone (Osteoblast) Blood (OCI-LY7) Stomach Placenta Colon (HCT116) Blood (Karpas-422) Lung (PC-9) Pancreas Uterus Thymus Epithelial (MCF-7)
Transcript factors that have rs2990220[chr1:155190254]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 155189871 155190474 ZNF143 GTRD no Epithelial (MCF-7) 21341365
chr1 155189951 155190476 ZNF143 GTRD no Epithelial (MCF-7) 21341366
chr1 155190019 155190464 ZNF143 GTRD no Epithelial (MCF-7) 21341367
Genes associated with rs2990220[chr1:155190254], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 155036224 155060014 + EFNA3 ENSG00000143590.9 155036224 130240 Uterus 0.271522 1320