EnhancerDB
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Enhancers that have rs3059479[chr2:38945338]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 38916069 38955355 enh5435
Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Ovary Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs3059479[chr2:38945338]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 38945321 38945342 IRF1 JASPAR yes 73169357
chr2 38945322 38945343 IRF1 JASPAR yes 73169359
chr2 38945323 38945338 FOXP1 JASPAR yes 73169360
chr2 38945323 38945344 IRF1 JASPAR yes 73169361
chr2 38945327 38945348 IRF1 JASPAR yes 73169362
chr2 38945328 38945343 FOXP1 JASPAR yes 73169363
chr2 38945328 38945349 IRF1 JASPAR yes 73169364
chr2 38945332 38945353 IRF1 JASPAR yes 73169365
chr2 38945333 38945348 FOXP1 JASPAR yes 73169366
chr2 38945333 38945354 IRF1 JASPAR yes 73169367
chr2 38945334 38945355 IRF1 JASPAR yes 73169368
chr2 38945335 38945350 FOXP1 JASPAR yes 73169369
chr2 38945335 38945356 IRF1 JASPAR yes 73169370
chr2 38945336 38945357 IRF1 JASPAR yes 73169371
chr2 38945337 38945352 FOXP1 JASPAR yes 73169372
chr2 38945337 38945358 IRF1 JASPAR yes 73169373
chr2 38945338 38945353 FOXP1 JASPAR yes 73169374
chr2 38945338 38945359 IRF1 JASPAR yes 73169375
Genes associated with rs3059479[chr2:38945338], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More