EnhancerDB
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  3. rs3122040[chr1:25045883]
Enhancers that have rs3122040[chr1:25045883]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 25026945 25066186 enh139
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs3122040[chr1:25045883]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 25045879 25045883 LFA1 TRANSFAC yes 27522643
chr1 25045879 25045891 NHLH1 JASPAR yes 27522644
chr1 25045880 25045890 NHLH1 JASPAR yes 27522645
Genes associated with rs3122040[chr1:25045883], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More