EnhancerDB
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  3. rs3129973[chr6:30721143]
Enhancers that have rs3129973[chr6:30721143]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 30713465 30740215 enh23148
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs3129973[chr6:30721143]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 30721122 30721143 IRF1 JASPAR yes 101044462
chr6 30721130 30721144 TCF7L2 JASPAR yes 101044468
chr6 30721138 30721153 SOX21 JASPAR yes 101044469
chr6 30721138 30721154 SOX4 JASPAR yes 101044470
chr6 30721139 30721149 ZNF740 JASPAR yes 101044471
Genes associated with rs3129973[chr6:30721143], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr6 30038043 30043664 - RNF39 ENSG00000204618.4 30043664 677479 Pancreas 0.000218679 6329