EnhancerDB
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  3. rs373966601[chr19:2540416]
Enhancers that have rs373966601[chr19:2540416]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 2521384 2555115 enh4959
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs373966601[chr19:2540416]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 2539983 2541557 ZBTB33 GTRD no Lung (A549) 21836484
chr19 2539983 2541557 ZBTB33 GTRD no Lung (A549) 108361546
chr19 2540150 2541415 ZNF274 GTRD no Liver (HepG2) 21836485
chr19 2540150 2541415 ZNF274 GTRD no Liver (HepG2) 108361547
chr19 2540170 2541619 ZNF143 GTRD no Epithelial (MCF-7) 21836486
chr19 2540170 2541619 ZNF143 GTRD no Epithelial (MCF-7) 108361548
chr19 2540177 2543122 TCF7L2 GTRD no Colon (HCT116) 21836487
chr19 2540177 2543122 TCF7L2 GTRD no Colon (HCT116) 108361549
chr19 2540193 2541330 TCF7L2 GTRD no Colon (HCT116) 21836488
chr19 2540193 2541330 TCF7L2 GTRD no Colon (HCT116) 108361550
chr19 2540208 2543082 TCF7L2 GTRD no Colon (HCT116) 21836489
chr19 2540208 2543082 TCF7L2 GTRD no Colon (HCT116) 108361551
chr19 2540226 2541499 P63 GTRD no Skin (Keratinocyte) 108361552
chr19 2540241 2543099 TCF7L2 GTRD no Colon (HCT116) 21836490
chr19 2540241 2543099 TCF7L2 GTRD no Colon (HCT116) 108361553
chr19 2540255 2541475 ZBTB33 GTRD no Lung (A549) 21836491
chr19 2540255 2541475 ZBTB33 GTRD no Lung (A549) 108361554
chr19 2540261 2541462 ZNF143 GTRD no Epithelial (MCF-7) 21836492
chr19 2540261 2541462 ZNF143 GTRD no Epithelial (MCF-7) 108361555
chr19 2540286 2541453 ZNF143 GTRD no Epithelial (MCF-7) 21836493
chr19 2540286 2541453 ZNF143 GTRD no Epithelial (MCF-7) 108361556
chr19 2540292 2541324 TCF7L2 GTRD no Colon (HCT116) 21836494
chr19 2540292 2541324 TCF7L2 GTRD no Colon (HCT116) 108361557
chr19 2540298 2541433 ZBTB33 GTRD no Lung (A549) 21836495
chr19 2540298 2541433 ZBTB33 GTRD no Lung (A549) 108361558
chr19 2540309 2541446 ZNF274 GTRD no Liver (HepG2) 21836496
chr19 2540309 2541446 ZNF274 GTRD no Liver (HepG2) 108361559
chr19 2540322 2541472 ZBTB33 GTRD no Brain (SK-N-SH) 21836497
chr19 2540322 2541472 ZBTB33 GTRD no Brain (SK-N-SH) 108361560
chr19 2540325 2541272 ZBTB33 GTRD no Brain (SK-N-SH) 21836498
chr19 2540325 2541272 ZBTB33 GTRD no Brain (SK-N-SH) 108361561
chr19 2540326 2544542 ZNF274 GTRD no Cervix (HeLa-S3) 21836499
chr19 2540326 2544542 ZNF274 GTRD no Cervix (HeLa-S3) 108361562
chr19 2540326 2544542 ZNF274 GTRD no Cervix (HeLa-S3) 108361563
chr19 2540326 2544542 ZNF274 GTRD no Cervix (HeLa-S3) 108361564
chr19 2540333 2544227 TCF7L2 GTRD no Colon (HCT116) 21836500
chr19 2540333 2544227 TCF7L2 GTRD no Colon (HCT116) 108361565
chr19 2540333 2544227 TCF7L2 GTRD no Colon (HCT116) 108361566
chr19 2540333 2544227 TCF7L2 GTRD no Colon (HCT116) 108361567
chr19 2540343 2541456 ZNF143 GTRD no Epithelial (MCF-7) 21836501
chr19 2540343 2541456 ZNF143 GTRD no Epithelial (MCF-7) 108361568
chr19 2540351 2541301 ZBTB33 GTRD no Lung (A549) 21836502
chr19 2540351 2541301 ZBTB33 GTRD no Lung (A549) 108361569
chr19 2540352 2541500 P63 GTRD no Skin (Keratinocyte) 108361570
chr19 2540353 2541586 ZNF274 GTRD no Cervix (HeLa-S3) 21836503
chr19 2540353 2541586 ZNF274 GTRD no Cervix (HeLa-S3) 108361571
chr19 2540356 2541211 ZNF143 GTRD no Epithelial (MCF-7) 21836504
chr19 2540356 2541211 ZNF143 GTRD no Epithelial (MCF-7) 108361572
chr19 2540363 2541232 TCF7L2 GTRD no Colon (HCT116) 21836505
chr19 2540363 2541232 TCF7L2 GTRD no Colon (HCT116) 108361573
chr19 2540373 2541293 ZNF274 GTRD no Cervix (HeLa-S3) 21836506
chr19 2540373 2541293 ZNF274 GTRD no Cervix (HeLa-S3) 108361574
chr19 2540379 2541623 ZBTB33 GTRD no Brain (SK-N-SH) 21836507
chr19 2540379 2541623 ZBTB33 GTRD no Brain (SK-N-SH) 108361575
chr19 2540379 2542161 ZBTB33 GTRD no Lung (A549) 21836508
chr19 2540379 2542161 ZBTB33 GTRD no Lung (A549) 108361576
chr19 2540391 2541176 MYOD GTRD no Muscle (Myoblast) 21836509
chr19 2540391 2541176 MYOD GTRD no Muscle (Myoblast) 108361577
chr19 2540394 2541558 ZNF274 GTRD no Liver (HepG2) 21836510
chr19 2540394 2541558 ZNF274 GTRD no Liver (HepG2) 108361578
chr19 2540399 2541551 P63 GTRD no Skin (Keratinocyte) 108361579
chr19 2540400 2541368 ZBTB33 GTRD no Brain (SK-N-SH) 21836511
chr19 2540400 2541368 ZBTB33 GTRD no Brain (SK-N-SH) 108361580
chr19 2540405 2541255 ZBTB33 GTRD no Brain (SK-N-SH) 21836512
chr19 2540405 2541255 ZBTB33 GTRD no Brain (SK-N-SH) 108361581
chr19 2540405 2541623 TCF7L2 GTRD no Colon (HCT116) 21836513
chr19 2540405 2541623 TCF7L2 GTRD no Colon (HCT116) 108361582
chr19 2540410 2541434 ZBTB33 GTRD no Lung (A549) 21836514
chr19 2540410 2541434 ZBTB33 GTRD no Lung (A549) 108361583
Genes associated with rs373966601[chr19:2540416], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More