EnhancerDB
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  3. rs386020[chr1:55028746]
Enhancers that have rs386020[chr1:55028746]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 55021705 55049987 enh11873
Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs386020[chr1:55028746]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 55028731 55028746 NR2C2 JASPAR yes 28992727
chr1 55028736 55028751 TFAP2A JASPAR yes 28992728
chr1 55028736 55028751 TFAP2C JASPAR yes 28992729
chr1 55028738 55028750 TFAP2A JASPAR yes 28992730
chr1 55028738 55028750 TFAP2B JASPAR yes 28992731
chr1 55028738 55028750 TFAP2C JASPAR yes 28992732
chr1 55028738 55028753 TFAP2A JASPAR yes 28992733
chr1 55028738 55028753 TFAP2C JASPAR yes 28992734
chr1 55028740 55028749 TFAP2A JASPAR yes 28992735
chr1 55028746 55028759 TFAP2A JASPAR yes 28992736
chr1 55028746 55028759 TFAP2C JASPAR yes 28992737
Genes associated with rs386020[chr1:55028746], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More