EnhancerDB
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  3. rs3887566[chr1:201423940]
Enhancers that have rs3887566[chr1:201423940]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 201414985 201433510 enh875
Brain (SK-N-MC) Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs3887566[chr1:201423940]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 201423236 201424441 ZNF143 GTRD no Epithelial (MCF-7) 21364048
chr1 201423568 201424474 ZNF143 GTRD no Epithelial (MCF-7) 21364049
chr1 201423578 201424279 ZNF143 GTRD no Epithelial (MCF-7) 21364050
chr1 201423586 201424428 ZNF143 GTRD no Epithelial (MCF-7) 21364051
chr1 201423669 201424027 ZNF274 GTRD no Cervix (HeLa-S3) 21364052
chr1 201423812 201424453 TCF7L2 GTRD no Colon (HCT116) 21364053
Genes associated with rs3887566[chr1:201423940], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 201434620 201438365 - PHLDA3 ENSG00000174307.5 201438365 10680 Stomach 0.133529 1707