EnhancerDB
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  3. rs397696539[chr1:205246308]
Enhancers that have rs397696539[chr1:205246308]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 205243649 205259635 enh893
Bone Marrow (K562) Astrocyte Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Heart
Transcript factors that have rs397696539[chr1:205246308]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 205245966 205246318 ZNF274 GTRD no Blood (GM12878) 21371211
chr1 205245974 205246425 ZNF274 GTRD no Blood (GM12878) 21371212
chr1 205245989 205246482 ZNF274 GTRD no Blood (GM12878) 21371213
chr1 205246298 205246313 LEF1 JASPAR yes 34750229
chr1 205246299 205246313 TCF7L2 JASPAR yes 34750230
chr1 205246300 205246314 ONECUT3 JASPAR yes 34750231
chr1 205246301 205246313 IRF1 JASPAR yes 34750232
chr1 205246302 205246308 LEF1 TRANSFAC yes 34750233
chr1 205246302 205246308 TCF4 TRANSFAC yes 34750234
chr1 205246302 205246323 IRF1 JASPAR yes 34750235
chr1 205246303 205246324 IRF1 JASPAR yes 34750236
chr1 205246305 205246326 IRF1 JASPAR yes 34750237
chr1 205246307 205246322 FOXP1 JASPAR yes 34750238
chr1 205246308 205246323 FOXP1 JASPAR yes 34750239
Genes associated with rs397696539[chr1:205246308], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More