EnhancerDB
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  3. rs397716321[chr1:227016194]
Enhancers that have rs397716321[chr1:227016194]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 226990625 227018206 enh975
Bone Marrow (K562) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 227014699 227016924 vista142
VISTA
Transcript factors that have rs397716321[chr1:227016194]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 227016190 227016202 MEF2A JASPAR yes 35849260
chr1 227016190 227016202 MEF2D JASPAR yes 35849261
chr1 227016190 227016202 MEF2A JASPAR yes 71160175
chr1 227016190 227016202 MEF2D JASPAR yes 71160176
chr1 227016190 227016205 FOXA1 JASPAR yes 35849262
chr1 227016190 227016205 FOXA1 JASPAR yes 71160177
chr1 227016191 227016203 FOXI1 JASPAR yes 35849263
chr1 227016191 227016203 FOXI1 JASPAR yes 71160178
chr1 227016192 227016204 FOXC2 JASPAR yes 35849264
chr1 227016192 227016204 FOXC2 JASPAR yes 71160179
chr1 227016192 227016206 ONECUT3 JASPAR yes 35849265
chr1 227016192 227016206 ONECUT3 JASPAR yes 71160180
chr1 227016193 227016204 FOXB1 JASPAR yes 35849266
chr1 227016193 227016204 FOXC1 JASPAR yes 35849267
chr1 227016193 227016204 FOXB1 JASPAR yes 71160181
chr1 227016193 227016204 FOXC1 JASPAR yes 71160182
chr1 227016193 227016209 POU4F2 JASPAR yes 35849268
chr1 227016193 227016209 POU4F3 JASPAR yes 35849269
chr1 227016193 227016209 POU4F2 JASPAR yes 71160183
chr1 227016193 227016209 POU4F3 JASPAR yes 71160184
chr1 227016194 227016198 YY1 TRANSFAC yes 35849270
chr1 227016194 227016198 YY1 TRANSFAC yes 71160185
chr1 227016194 227016209 FOXA1 JASPAR yes 35849271
chr1 227016194 227016209 FOXA1 JASPAR yes 71160186
Genes associated with rs397716321[chr1:227016194], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 226124298 226129189 - LEFTY2 ENSG00000143768.7 226129189 887005 Stomach 0.369904 1894