EnhancerDB
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  3. rs397806573[chr12:50932406]
Enhancers that have rs397806573[chr12:50932406]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 50906745 50954311 enh2346
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
chr12 50932147 50932418 vista13382
VISTA
Transcript factors that have rs397806573[chr12:50932406]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 50931879 50935788 ZNF274 GTRD no Bone Marrow (K562) 21545238
chr12 50931879 50935788 ZNF274 GTRD no Bone Marrow (K562) 108031422
chr12 50932270 50935799 ZNF274 GTRD no Liver (HepG2) 21545241
chr12 50932270 50935799 ZNF274 GTRD no Liver (HepG2) 108031425
chr12 50932389 50932885 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21545242
chr12 50932389 50932885 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108031426
chr12 50932395 50932409 SPIC JASPAR yes 82402475
chr12 50932395 50932409 SPIC JASPAR yes 120840429
chr12 50932402 50932417 STAT2 JASPAR yes 82402476
chr12 50932402 50932417 STAT2 JASPAR yes 120840430
Genes associated with rs397806573[chr12:50932406], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More