EnhancerDB
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  3. rs397861459[chr1:203475608]
Enhancers that have rs397861459[chr1:203475608]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 203471885 203497995 enh12556
Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs397861459[chr1:203475608]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 203474819 203476480 ZNF274 GTRD no Cervix (HeLa-S3) 21368984
chr1 203475060 203476643 ZNF143 GTRD no Epithelial (MCF-7) 21368985
chr1 203475178 203476125 ZNF143 GTRD no Epithelial (MCF-7) 21368986
chr1 203475275 203475972 TCF7L2 GTRD no Colon (HCT116) 21368987
chr1 203475303 203476222 ZNF143 GTRD no Epithelial (MCF-7) 21368988
chr1 203475327 203476271 ZNF143 GTRD no Epithelial (MCF-7) 21368989
chr1 203475505 203476192 ZNF143 GTRD no Epithelial (MCF-7) 21368990
chr1 203475538 203476087 TCF7L2 GTRD no Colon (HCT116) 21368991
chr1 203475573 203476057 ZNF143 GTRD no Epithelial (MCF-7) 21368992
chr1 203475592 203475939 ZNF143 GTRD no Epithelial (MCF-7) 21368993
chr1 203475597 203475610 DUXA JASPAR yes 34632880
chr1 203475598 203475609 DUX4 JASPAR yes 34632881
chr1 203475598 203475609 PHOX2A JASPAR yes 34632882
chr1 203475598 203475609 PROP1 JASPAR yes 34632883
chr1 203475600 203475610 POU6F2 JASPAR yes 34632884
chr1 203475601 203475611 ALX3 JASPAR yes 34632885
chr1 203475601 203475611 ESX1 JASPAR yes 34632886
chr1 203475601 203475611 GSX1 JASPAR yes 34632887
chr1 203475601 203475611 GSX2 JASPAR yes 34632888
chr1 203475601 203475611 HOXB2 JASPAR yes 34632889
chr1 203475601 203475611 HOXB3 JASPAR yes 34632890
chr1 203475601 203475611 LBX2 JASPAR yes 34632891
chr1 203475601 203475611 LHX2 JASPAR yes 34632892
chr1 203475601 203475611 MEOX1 JASPAR yes 34632893
chr1 203475601 203475611 MEOX2 JASPAR yes 34632894
chr1 203475601 203475611 MIXL1 JASPAR yes 34632895
chr1 203475601 203475611 MNX1 JASPAR yes 34632896
chr1 203475601 203475611 NOTO JASPAR yes 34632897
chr1 203475602 203475610 BSX JASPAR yes 34632898
chr1 203475602 203475610 DLX6 JASPAR yes 34632899
chr1 203475602 203475610 EN1 JASPAR yes 34632900
chr1 203475602 203475610 ISX JASPAR yes 34632901
chr1 203475602 203475610 LBX1 JASPAR yes 34632902
chr1 203475602 203475610 LHX9 JASPAR yes 34632903
chr1 203475602 203475610 LMX1A JASPAR yes 34632904
chr1 203475602 203475610 LMX1B JASPAR yes 34632905
chr1 203475602 203475610 NKX6-1 JASPAR yes 34632906
chr1 203475602 203475610 NKX6-2 JASPAR yes 34632907
chr1 203475602 203475610 PAX4 JASPAR yes 34632908
chr1 203475602 203475610 PDX1 JASPAR yes 34632909
chr1 203475602 203475610 PRRX1 JASPAR yes 34632910
chr1 203475602 203475610 RAX2 JASPAR yes 34632911
chr1 203475602 203475610 SHOX JASPAR yes 34632912
chr1 203475602 203475610 UNCX JASPAR yes 34632913
chr1 203475602 203475610 VAX1 JASPAR yes 34632914
chr1 203475602 203475610 VAX2 JASPAR yes 34632915
chr1 203475602 203475610 VSX1 JASPAR yes 34632916
chr1 203475602 203475610 VSX2 JASPAR yes 34632917
chr1 203475602 203475612 HOXB13 JASPAR yes 34632918
chr1 203475602 203475612 HOXD13 JASPAR yes 34632919
chr1 203475605 203475620 FOXP1 JASPAR yes 34632920
chr1 203475606 203475621 FOXP1 JASPAR yes 34632921
chr1 203475607 203475613 TBP TRANSFAC yes 34632922
Genes associated with rs397861459[chr1:203475608], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More