EnhancerDB
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  3. rs397862747[chr1:55047643]
Enhancers that have rs397862747[chr1:55047643]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 55021705 55049987 enh11873
Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs397862747[chr1:55047643]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 55047635 55047650 TFAP2A JASPAR yes 28995381
chr1 55047637 55047652 TFAP2C JASPAR yes 28995382
chr1 55047638 55047649 TFAP2A JASPAR yes 28995383
chr1 55047638 55047649 TFAP2B JASPAR yes 28995384
chr1 55047638 55047649 TFAP2C JASPAR yes 28995385
chr1 55047638 55047650 INSM1 JASPAR yes 28995386
chr1 55047638 55047650 TFAP2A JASPAR yes 28995387
chr1 55047638 55047650 TFAP2B JASPAR yes 28995388
chr1 55047638 55047650 TFAP2C JASPAR yes 28995389
chr1 55047639 55047648 TFAP2A JASPAR yes 28995390
chr1 55047642 55047661 CTCF JASPAR yes 28995391
chr1 55047643 55047648 SP1 TRANSFAC yes 28995392
Genes associated with rs397862747[chr1:55047643], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More