EnhancerDB
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  3. rs397946540[chr1:3247822]
Enhancers that have rs397946540[chr1:3247822]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 3220368 3259315 enh11429
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Kidney Epithelial (MCF-7) Stomach Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 3244561 3248729 vista2
VISTA
Transcript factors that have rs397946540[chr1:3247822]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 3247817 3247828 TFAP2A JASPAR yes 26280956
chr1 3247817 3247828 TFAP2B JASPAR yes 26280957
chr1 3247817 3247828 TFAP2C JASPAR yes 26280958
chr1 3247817 3247828 TFAP2A JASPAR yes 71117917
chr1 3247817 3247828 TFAP2B JASPAR yes 71117918
chr1 3247817 3247828 TFAP2C JASPAR yes 71117919
chr1 3247817 3247829 TFAP2A JASPAR yes 26280959
chr1 3247817 3247829 TFAP2B JASPAR yes 26280960
chr1 3247817 3247829 TFAP2A JASPAR yes 71117920
chr1 3247817 3247829 TFAP2B JASPAR yes 71117921
chr1 3247817 3247830 TFAP2B JASPAR yes 26280961
chr1 3247817 3247830 TFAP2B JASPAR yes 71117922
chr1 3247818 3247827 TFAP2A JASPAR yes 26280962
chr1 3247818 3247827 TFAP2A JASPAR yes 71117923
chr1 3247820 3247830 ZNF740 JASPAR yes 26280963
chr1 3247820 3247830 ZNF740 JASPAR yes 71117924
chr1 3247821 3247831 ZNF740 JASPAR yes 26280964
chr1 3247821 3247831 ZNF740 JASPAR yes 71117925
chr1 3247821 3247833 ZBTB7B JASPAR yes 26280965
chr1 3247821 3247833 ZBTB7B JASPAR yes 71117926
Genes associated with rs397946540[chr1:3247822], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More