EnhancerDB
  1. Home
  2. SNP
  3. rs397962455[chr17:59397257]
Enhancers that have rs397962455[chr17:59397257]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 59383635 59420035 enh17269
Astrocyte Colon (HCT116) Uterus Epithelial (MCF-7) Kidney Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Breast Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs397962455[chr17:59397257]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 59396443 59400405 ZNF143 GTRD no Epithelial (MCF-7) 21777324
chr17 59396443 59400405 ZNF143 GTRD no Epithelial (MCF-7) 108279396
chr17 59397239 59397260 IRF1 JASPAR yes 55147845
chr17 59397245 59397266 IRF1 JASPAR yes 55147847
chr17 59397246 59397267 IRF1 JASPAR yes 55147848
chr17 59397248 59397263 FOXP1 JASPAR yes 55147850
chr17 59397252 59397267 FOXP1 JASPAR yes 55147851
chr17 59397253 59397265 FOXC2 JASPAR yes 55147852
chr17 59397255 59397259 YY1 TRANSFAC yes 55147853
chr17 59397257 59397272 FOXP1 JASPAR yes 55147854
Genes associated with rs397962455[chr17:59397257], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More