EnhancerDB
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  3. rs398040841[chr19:2528500]
Enhancers that have rs398040841[chr19:2528500]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 2521384 2555115 enh4959
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs398040841[chr19:2528500]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 2526984 2530255 ZNF143 GTRD no Epithelial (MCF-7) 21836208
chr19 2526984 2530255 ZNF143 GTRD no Epithelial (MCF-7) 108361202
chr19 2526984 2530255 ZNF143 GTRD no Epithelial (MCF-7) 108361203
chr19 2527095 2530280 ZNF143 GTRD no Epithelial (MCF-7) 21836209
chr19 2527095 2530280 ZNF143 GTRD no Epithelial (MCF-7) 108361204
chr19 2527095 2530280 ZNF143 GTRD no Epithelial (MCF-7) 108361205
chr19 2528262 2529167 ZNF143 GTRD no Epithelial (MCF-7) 21836210
chr19 2528262 2529167 ZNF143 GTRD no Epithelial (MCF-7) 108361206
chr19 2528271 2529309 ZNF143 GTRD no Epithelial (MCF-7) 21836211
chr19 2528271 2529309 ZNF143 GTRD no Epithelial (MCF-7) 108361207
chr19 2528275 2529913 ZNF143 GTRD no Epithelial (MCF-7) 21836212
chr19 2528275 2529913 ZNF143 GTRD no Epithelial (MCF-7) 108361208
chr19 2528275 2529913 ZNF143 GTRD no Epithelial (MCF-7) 108361209
chr19 2528345 2530097 ZNF143 GTRD no Epithelial (MCF-7) 21836213
chr19 2528345 2530097 ZNF143 GTRD no Epithelial (MCF-7) 108361210
chr19 2528345 2530097 ZNF143 GTRD no Epithelial (MCF-7) 108361211
chr19 2528346 2529250 ZNF274 GTRD no Cervix (HeLa-S3) 21836214
chr19 2528346 2529250 ZNF274 GTRD no Cervix (HeLa-S3) 108361212
chr19 2528350 2530251 ZNF143 GTRD no Epithelial (MCF-7) 21836215
chr19 2528350 2530251 ZNF143 GTRD no Epithelial (MCF-7) 108361213
chr19 2528350 2530251 ZNF143 GTRD no Epithelial (MCF-7) 108361214
chr19 2528354 2530258 ZNF143 GTRD no Epithelial (MCF-7) 21836216
chr19 2528354 2530258 ZNF143 GTRD no Epithelial (MCF-7) 108361215
chr19 2528354 2530258 ZNF143 GTRD no Epithelial (MCF-7) 108361216
chr19 2528357 2530299 ZNF274 GTRD no Cervix (HeLa-S3) 21836217
chr19 2528357 2530299 ZNF274 GTRD no Cervix (HeLa-S3) 108361217
chr19 2528357 2530299 ZNF274 GTRD no Cervix (HeLa-S3) 108361218
chr19 2528369 2529198 ZNF274 GTRD no Bone Marrow (K562) 21836218
chr19 2528369 2529198 ZNF274 GTRD no Bone Marrow (K562) 108361219
chr19 2528384 2530300 ZNF274 GTRD no Cervix (HeLa-S3) 21836219
chr19 2528384 2530300 ZNF274 GTRD no Cervix (HeLa-S3) 108361220
chr19 2528384 2530300 ZNF274 GTRD no Cervix (HeLa-S3) 108361221
chr19 2528397 2530086 ZNF143 GTRD no Epithelial (MCF-7) 21836220
chr19 2528397 2530086 ZNF143 GTRD no Epithelial (MCF-7) 108361222
chr19 2528397 2530086 ZNF143 GTRD no Epithelial (MCF-7) 108361223
chr19 2528406 2529368 ZNF143 GTRD no Epithelial (MCF-7) 21836221
chr19 2528406 2529368 ZNF143 GTRD no Epithelial (MCF-7) 108361224
chr19 2528411 2530076 ZNF143 GTRD no Epithelial (MCF-7) 21836222
chr19 2528411 2530076 ZNF143 GTRD no Epithelial (MCF-7) 108361225
chr19 2528411 2530076 ZNF143 GTRD no Epithelial (MCF-7) 108361226
chr19 2528432 2530179 ZNF274 GTRD no Cervix (HeLa-S3) 21836223
chr19 2528432 2530179 ZNF274 GTRD no Cervix (HeLa-S3) 108361227
chr19 2528432 2530179 ZNF274 GTRD no Cervix (HeLa-S3) 108361228
chr19 2528438 2529344 ZNF143 GTRD no Epithelial (MCF-7) 21836224
chr19 2528438 2529344 ZNF143 GTRD no Epithelial (MCF-7) 108361229
chr19 2528457 2530168 AR GTRD no Prostate (PC-3) 21836225
chr19 2528457 2530168 AR GTRD no Prostate (PC-3) 108361230
chr19 2528457 2530168 AR GTRD no Prostate (PC-3) 108361231
chr19 2528476 2530197 ZBTB33 GTRD no Lung (A549) 21836226
chr19 2528476 2530197 ZBTB33 GTRD no Lung (A549) 108361232
chr19 2528476 2530197 ZBTB33 GTRD no Lung (A549) 108361233
chr19 2528490 2530061 ZNF143 GTRD no Epithelial (MCF-7) 21836227
chr19 2528490 2530061 ZNF143 GTRD no Epithelial (MCF-7) 108361234
chr19 2528490 2530061 ZNF143 GTRD no Epithelial (MCF-7) 108361235
chr19 2528496 2530131 ZNF143 GTRD no Epithelial (MCF-7) 21836228
chr19 2528496 2530131 ZNF143 GTRD no Epithelial (MCF-7) 108361236
chr19 2528496 2530131 ZNF143 GTRD no Epithelial (MCF-7) 108361237
chr19 2528497 2528512 FOXP1 JASPAR yes 112069685
chr19 2528498 2528513 FOXP1 JASPAR yes 112069686
chr19 2528499 2528514 FOXP1 JASPAR yes 112069687
chr19 2528500 2528515 FOXP1 JASPAR yes 112069688
chr19 2528500 2528521 IRF1 JASPAR yes 112069689
Genes associated with rs398040841[chr19:2528500], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More