EnhancerDB
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  3. rs398040899[chr19:11052300]
Enhancers that have rs398040899[chr19:11052300]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 11044165 11061272 enh17918
Bone Marrow (K562) Brain (SK-N-MC) Colon (HCT116) Pancreas Uterus Stomach Epithelial (MCF-7) Skin (Keratinocyte) Brain (SK-N-SH) Blood (OCI-LY7) Lung (A549) Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Spleen Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs398040899[chr19:11052300]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 11051759 11053101 STAT3 GTRD no Blood (OCI-LY7) 21849233
chr19 11052199 11053165 ZNF143 GTRD no Epithelial (MCF-7) 21849234
chr19 11052241 11053245 TCF7L2 GTRD no Colon (HCT116) 21849235
chr19 11052243 11053092 ZNF143 GTRD no Epithelial (MCF-7) 21849236
chr19 11052280 11053038 ZNF143 GTRD no Epithelial (MCF-7) 21849237
chr19 11052285 11052300 FOXP1 JASPAR yes 112446930
chr19 11052286 11052301 FOXP1 JASPAR yes 112446931
chr19 11052287 11052302 MEF2C JASPAR yes 112446932
chr19 11052293 11052809 ZNF143 GTRD no Epithelial (MCF-7) 21849238
chr19 11052295 11052310 FOXP1 JASPAR yes 112446933
chr19 11052295 11052316 IRF1 JASPAR yes 112446934
chr19 11052298 11052302 YY1 TRANSFAC yes 112446935
chr19 11052300 11052315 MEF2C JASPAR yes 112446936
Genes associated with rs398040899[chr19:11052300], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More