EnhancerDB
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  3. rs398073946[chr1:55025266]
Enhancers that have rs398073946[chr1:55025266]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 55021705 55049987 enh11873
Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs398073946[chr1:55025266]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 55025255 55025276 IRF1 JASPAR yes 28992151
chr1 55025256 55025277 IRF1 JASPAR yes 28992152
chr1 55025257 55025272 STAT2 JASPAR yes 28992153
chr1 55025258 55025272 STAT1 JASPAR yes 28992154
chr1 55025260 55025281 IRF1 JASPAR yes 28992155
chr1 55025261 55025276 FOXP1 JASPAR yes 28992156
chr1 55025263 55025278 FOXP1 JASPAR yes 28992157
chr1 55025263 55025284 ZNF263 JASPAR yes 28992158
chr1 55025264 55025285 IRF1 JASPAR yes 28992159
chr1 55025265 55025280 FOXP1 JASPAR yes 28992160
chr1 55025266 55025281 FOXP1 JASPAR yes 28992161
Genes associated with rs398073946[chr1:55025266], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More