EnhancerDB
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  3. rs400493[chr1:209587688]
Enhancers that have rs400493[chr1:209587688]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 209568193 209597635 enh12617
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Lung (A549) Placenta Colon (HCT116) Uterus Thyroid Peripheral Blood (MM.1S) Lung (PC-9) Breast Spleen Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs400493[chr1:209587688]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 209585538 209588619 ZBTB33 GTRD no Brain (SK-N-SH) 107865749
chr1 209587177 209588554 ZNF274 GTRD no Cervix (HeLa-S3) 21375312
chr1 209587280 209589178 ZNF274 GTRD no Cervix (HeLa-S3) 21375313
chr1 209587324 209588492 ZNF143 GTRD no Epithelial (MCF-7) 21375314
chr1 209587343 209588362 ZNF143 GTRD no Epithelial (MCF-7) 21375315
chr1 209587378 209588411 ZNF143 GTRD no Epithelial (MCF-7) 21375316
chr1 209587378 209588443 ZNF143 GTRD no Epithelial (MCF-7) 21375317
chr1 209587399 209588527 ZNF143 GTRD no Epithelial (MCF-7) 21375318
chr1 209587411 209588316 ZNF143 GTRD no Epithelial (MCF-7) 21375319
chr1 209587430 209588322 ZNF143 GTRD no Epithelial (MCF-7) 21375320
chr1 209587432 209588804 AR GTRD no Prostate (PC-3) 21375321
chr1 209587433 209588554 ZNF274 GTRD no Cervix (HeLa-S3) 21375322
chr1 209587441 209588430 ZNF143 GTRD no Epithelial (MCF-7) 21375323
chr1 209587445 209588218 ZNF143 GTRD no Epithelial (MCF-7) 21375324
chr1 209587459 209588360 ZNF143 GTRD no Epithelial (MCF-7) 21375325
chr1 209587479 209588274 ZBTB33 GTRD no Lung (A549) 21375326
chr1 209587481 209588254 ZNF143 GTRD no Epithelial (MCF-7) 21375327
chr1 209587489 209588385 ZNF274 GTRD no Cervix (HeLa-S3) 21375328
chr1 209587499 209588232 ZNF143 GTRD no Epithelial (MCF-7) 21375329
chr1 209587528 209588323 ZNF143 GTRD no Epithelial (MCF-7) 21375330
chr1 209587538 209588426 ZNF274 GTRD no Cervix (HeLa-S3) 21375331
chr1 209587539 209588335 ZNF143 GTRD no Epithelial (MCF-7) 21375332
chr1 209587551 209588296 ZNF143 GTRD no Epithelial (MCF-7) 21375333
chr1 209587558 209588312 ZNF143 GTRD no Epithelial (MCF-7) 21375334
chr1 209587562 209588396 ZNF143 GTRD no Epithelial (MCF-7) 21375335
chr1 209587567 209588322 ZNF143 GTRD no Epithelial (MCF-7) 21375336
chr1 209587567 209588483 ZNF274 GTRD no Cervix (HeLa-S3) 21375337
chr1 209587576 209588395 ZBTB33 GTRD no Lung (A549) 21375338
chr1 209587581 209588198 ZNF143 GTRD no Epithelial (MCF-7) 21375339
chr1 209587584 209588055 ZNF143 GTRD no Epithelial (MCF-7) 21375340
chr1 209587589 209588261 ZNF143 GTRD no Epithelial (MCF-7) 21375341
chr1 209587596 209588270 ZNF143 GTRD no Epithelial (MCF-7) 21375342
chr1 209587607 209588498 ZBTB33 GTRD no Lung (A549) 21375343
chr1 209587620 209587991 ZNF143 GTRD no Epithelial (MCF-7) 21375344
chr1 209587622 209588128 ZNF143 GTRD no Epithelial (MCF-7) 21375345
chr1 209587633 209588136 ZNF143 GTRD no Epithelial (MCF-7) 21375346
chr1 209587646 209588203 ZNF143 GTRD no Epithelial (MCF-7) 21375347
chr1 209587648 209588533 ZNF274 GTRD no Cervix (HeLa-S3) 21375348
chr1 209587652 209588007 ZNF143 GTRD no Epithelial (MCF-7) 21375349
chr1 209587663 209588072 ZNF143 GTRD no Epithelial (MCF-7) 21375350
chr1 209587665 209588231 ZBTB33 GTRD no Lung (A549) 21375351
chr1 209587672 209588257 ZNF143 GTRD no Epithelial (MCF-7) 21375352
chr1 209587673 209587691 SRF JASPAR yes 34973522
chr1 209587686 209588320 ZNF274 GTRD no Cervix (HeLa-S3) 21375353
chr1 209587687 209587696 NKX3-2 JASPAR yes 34973526
Genes associated with rs400493[chr1:209587688], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More