EnhancerDB
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  3. rs4076580[chr1:1612809]
Enhancers that have rs4076580[chr1:1612809]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 1607365 1622353 enh2
Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Bone (Osteoblast) Thyroid Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Liver (HepG2) Prostate (RWPE1)
Transcript factors that have rs4076580[chr1:1612809]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 1612797 1612812 MEF2C JASPAR yes 26198252
chr1 1612797 1612818 IRF1 JASPAR yes 26198253
chr1 1612802 1612823 IRF1 JASPAR yes 26198254
chr1 1612803 1612809 TCF4 TRANSFAC yes 26198255
chr1 1612803 1612818 FOXP1 JASPAR yes 26198256
chr1 1612804 1612815 FOXP2 JASPAR yes 26198257
chr1 1612804 1612816 FOXC2 JASPAR yes 26198258
Genes associated with rs4076580[chr1:1612809], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More