EnhancerDB
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  3. rs4245729[chr1:204289393]
Enhancers that have rs4245729[chr1:204289393]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 204280925 204295275 enh12578
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Lung (PC-9) Stomach Placenta Colon (HCT116) Peripheral Blood (MM.1S) Muscle (Myoblast) Breast Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs4245729[chr1:204289393]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 204286232 204290079 ZNF274 GTRD no Bone Marrow (K562) 21370372
chr1 204286232 204290079 ZNF274 GTRD no Bone Marrow (K562) 107859825
chr1 204288629 204290004 ZNF274 GTRD no Bone Marrow (K562) 21370373
chr1 204288629 204290004 ZNF274 GTRD no Bone Marrow (K562) 107859826
chr1 204288972 204289894 ZNF274 GTRD no Bone Marrow (K562) 21370374
chr1 204288972 204289894 ZNF274 GTRD no Bone Marrow (K562) 107859827
chr1 204289076 204289998 ZNF274 GTRD no Bone Marrow (K562) 21370375
chr1 204289076 204289998 ZNF274 GTRD no Bone Marrow (K562) 107859828
chr1 204289106 204289792 ZBTB33 GTRD no Brain (SK-N-SH) 21370376
chr1 204289106 204289792 ZBTB33 GTRD no Brain (SK-N-SH) 107859829
chr1 204289109 204289835 ZBTB33 GTRD no Brain (SK-N-SH) 21370377
chr1 204289109 204289835 ZBTB33 GTRD no Brain (SK-N-SH) 107859830
chr1 204289188 204289752 ZNF274 GTRD no Bone Marrow (K562) 21370378
chr1 204289188 204289752 ZNF274 GTRD no Bone Marrow (K562) 107859831
chr1 204289209 204289847 ZBTB33 GTRD no Brain (SK-N-SH) 21370379
chr1 204289209 204289847 ZBTB33 GTRD no Brain (SK-N-SH) 107859832
chr1 204289248 204289710 ZNF274 GTRD no Bone Marrow (K562) 21370380
chr1 204289248 204289710 ZNF274 GTRD no Bone Marrow (K562) 107859833
chr1 204289270 204289759 ZNF274 GTRD no Bone Marrow (K562) 21370381
chr1 204289270 204289759 ZNF274 GTRD no Bone Marrow (K562) 107859834
chr1 204289273 204289750 ZNF274 GTRD no Bone Marrow (K562) 21370382
chr1 204289273 204289750 ZNF274 GTRD no Bone Marrow (K562) 107859835
chr1 204289281 204289608 SOX2 GTRD no Neural Stem Cells (H9) 21370383
chr1 204289281 204289608 SOX2 GTRD no Neural Stem Cells (H9) 107859836
chr1 204289308 204289604 SOX2 GTRD no Neural Stem Cells (H9) 21370384
chr1 204289308 204289604 SOX2 GTRD no Neural Stem Cells (H9) 107859837
chr1 204289320 204289760 SOX2 GTRD no Neural Stem Cells (H9) 21370385
chr1 204289320 204289760 SOX2 GTRD no Neural Stem Cells (H9) 107859838
chr1 204289342 204289614 ZNF274 GTRD no Bone Marrow (K562) 21370386
chr1 204289342 204289614 ZNF274 GTRD no Bone Marrow (K562) 107859839
chr1 204289343 204289607 SOX2 GTRD no Neural Stem Cells (H9) 21370387
chr1 204289343 204289607 SOX2 GTRD no Neural Stem Cells (H9) 107859840
Genes associated with rs4245729[chr1:204289393], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 204187979 204346793 - PLEKHA6 ENSG00000143850.8 204346793 0 Esophagus 1.66546e-11 1751