EnhancerDB
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  3. rs4335872[chr19:2580141]
Enhancers that have rs4335872[chr19:2580141]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 2555465 2582297 enh17850
Astrocyte Pancreas Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Brain (SK-N-SH) Bone (Osteoblast) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung
Transcript factors that have rs4335872[chr19:2580141]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 2576513 2580163 ZNF274 GTRD no Cervix (HeLa-S3) 21837210
chr19 2576513 2580163 ZNF274 GTRD no Cervix (HeLa-S3) 108362532
chr19 2577820 2580234 TCF7L2 GTRD no Colon (HCT116) 108362534
chr19 2577855 2580415 ZBTB33 GTRD no Lung (A549) 108362537
chr19 2577915 2580286 ZNF274 GTRD no Cervix (HeLa-S3) 21837214
chr19 2577915 2580286 ZNF274 GTRD no Cervix (HeLa-S3) 108362539
chr19 2577974 2580210 ZBTB33 GTRD no Lung (A549) 108362541
chr19 2578286 2580253 ZNF274 GTRD no Liver (HepG2) 21837237
chr19 2578286 2580253 ZNF274 GTRD no Liver (HepG2) 108362576
chr19 2578317 2580300 ZNF274 GTRD no Liver (HepG2) 21837240
chr19 2578317 2580300 ZNF274 GTRD no Liver (HepG2) 108362580
chr19 2578324 2580209 ZNF274 GTRD no Liver (HepG2) 21837242
chr19 2578324 2580209 ZNF274 GTRD no Liver (HepG2) 108362584
chr19 2578457 2580246 ZNF143 GTRD no Epithelial (MCF-7) 21837250
chr19 2578457 2580246 ZNF143 GTRD no Epithelial (MCF-7) 108362598
chr19 2578499 2580567 TCF7L2 GTRD no Colon (HCT116) 108362603
chr19 2578749 2580422 ZNF143 GTRD no Epithelial (MCF-7) 21837275
chr19 2578749 2580422 ZNF143 GTRD no Epithelial (MCF-7) 108362633
chr19 2578963 2580297 ZNF143 GTRD no Epithelial (MCF-7) 21837343
chr19 2578963 2580297 ZNF143 GTRD no Epithelial (MCF-7) 108362721
chr19 2579020 2580164 ZNF143 GTRD no Epithelial (MCF-7) 21837352
chr19 2579020 2580164 ZNF143 GTRD no Epithelial (MCF-7) 108362740
chr19 2579044 2580148 ZBTB33 GTRD no Lung (A549) 108362753
chr19 2579106 2580321 ZNF274 GTRD no Cervix (HeLa-S3) 21837376
chr19 2579106 2580321 ZNF274 GTRD no Cervix (HeLa-S3) 108362775
chr19 2579136 2580287 ZBTB33 GTRD no Lung (A549) 108362780
chr19 2579159 2580366 ZNF274 GTRD no Bone Marrow (K562) 108362787
chr19 2579200 2580284 ZNF274 GTRD no Blood (GM12878) 21837390
chr19 2579200 2580284 ZNF274 GTRD no Blood (GM12878) 108362793
chr19 2579207 2580315 ZNF274 GTRD no Blood (GM12878) 21837392
chr19 2579207 2580315 ZNF274 GTRD no Blood (GM12878) 108362797
chr19 2579208 2580141 ZNF143 GTRD no Epithelial (MCF-7) 21837393
chr19 2579208 2580141 ZNF143 GTRD no Epithelial (MCF-7) 108362798
chr19 2579211 2580228 ZBTB33 GTRD no Lung (A549) 108362799
chr19 2579252 2580143 ZNF274 GTRD no Bone Marrow (K562) 108362809
chr19 2579254 2580158 ZNF143 GTRD no Epithelial (MCF-7) 21837402
chr19 2579254 2580158 ZNF143 GTRD no Epithelial (MCF-7) 108362810
chr19 2579264 2580248 ZNF274 GTRD no Blood (GM12878) 21837406
chr19 2579264 2580248 ZNF274 GTRD no Blood (GM12878) 108362814
chr19 2580139 2580151 NHLH1 JASPAR yes 112077951
chr19 2580140 2580150 NHLH1 JASPAR yes 112077952
Genes associated with rs4335872[chr19:2580141], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More