EnhancerDB
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  3. rs4543739[chr1:25049680]
Enhancers that have rs4543739[chr1:25049680]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 25026945 25066186 enh139
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs4543739[chr1:25049680]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 25049668 25049682 POU4F1 JASPAR yes 27523177
chr1 25049674 25049689 MEF2A JASPAR yes 27523178
chr1 25049675 25049690 FOXP1 JASPAR yes 27523179
chr1 25049675 25049690 MEF2C JASPAR yes 27523180
chr1 25049675 25049696 IRF1 JASPAR yes 27523181
chr1 25049676 25049688 FOXC2 JASPAR yes 27523182
chr1 25049676 25049688 MEF2A JASPAR yes 27523183
chr1 25049676 25049688 MEF2B JASPAR yes 27523184
chr1 25049676 25049688 MEF2D JASPAR yes 27523185
chr1 25049677 25049687 MEF2A JASPAR yes 27523186
chr1 25049678 25049682 YY1 TRANSFAC yes 27523187
chr1 25049680 25049695 FOXA1 JASPAR yes 27523188
Genes associated with rs4543739[chr1:25049680], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More