EnhancerDB
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  3. rs4653431[chr1:225942686]
Enhancers that have rs4653431[chr1:225942686]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 225938095 225960315 enh12725
Liver Astrocyte Pancreas Uterus Epithelial (MCF-7) Stomach Bone (Osteoblast) Blood (OCI-LY7) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs4653431[chr1:225942686]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 225941037 225946019 STAT3 GTRD no Blood (OCI-LY7) 21385734
chr1 225942359 225943098 SOX2 GTRD no Neural Stem Cells (H9) 21385748
chr1 225942403 225943099 SOX2 GTRD no Neural Stem Cells (H9) 21385749
chr1 225942415 225942917 SOX2 GTRD no Neural Stem Cells (H9) 21385750
chr1 225942418 225943035 SOX2 GTRD no Neural Stem Cells (H9) 21385751
chr1 225942428 225942884 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21385752
chr1 225942501 225943092 SOX2 GTRD no Neural Stem Cells (H9) 21385753
chr1 225942518 225943013 SOX2 GTRD no Neural Stem Cells (H9) 21385754
chr1 225942521 225943041 SOX2 GTRD no Neural Stem Cells (H9) 21385755
chr1 225942562 225942762 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21385756
chr1 225942564 225942991 SOX2 GTRD no Neural Stem Cells (H9) 21385757
chr1 225942588 225942928 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21385758
chr1 225942592 225942986 SOX2 GTRD no Neural Stem Cells (H9) 21385759
chr1 225942606 225942945 SOX2 GTRD no Neural Stem Cells (H9) 21385760
chr1 225942670 225942894 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21385761
Genes associated with rs4653431[chr1:225942686], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 225589204 225616627 - LBR ENSG00000143815.10 225616627 326059 Liver 0.328911 1885