EnhancerDB
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  3. rs4660141[chr1:236162592]
Enhancers that have rs4660141[chr1:236162592]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 236157785 236169575 enh12809
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Blood (GM12878) Stomach Placenta Colon (HCT116) Thyroid Lung (PC-9) Muscle (Myoblast) Spleen Uterus Blood (T-cell) Heart
chr1 236162583 236163199 vista5739
VISTA
Transcript factors that have rs4660141[chr1:236162592]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 236162071 236162636 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21404177
chr1 236162071 236162636 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107886622
chr1 236162547 236163148 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21404178
chr1 236162547 236163148 NFIC UCSC Txn Factor no Conserved 107886623
chr1 236162547 236163148 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107886624
chr1 236162584 236163174 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21404179
chr1 236162584 236163174 IKZF1 UCSC Txn Factor no Conserved 107886625
chr1 236162584 236163174 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107886626
chr1 236162585 236162596 NRL JASPAR yes 36395306
chr1 236162585 236162596 NRL JASPAR yes 118490442
Genes associated with rs4660141[chr1:236162592], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 235490665 235507847 + GGPS1 ENSG00000152904.7 235490665 654745 Pancreas 0.245745 1968