EnhancerDB
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Enhancers that have rs527279398[chr12:52609187]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52591245 52620175 enh14727
Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs527279398[chr12:52609187]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52606625 52609363 ZNF143 GTRD no Epithelial (MCF-7) 21546725
chr12 52606625 52609363 ZNF143 GTRD no Epithelial (MCF-7) 108033682
chr12 52608819 52609602 ZNF143 GTRD no Epithelial (MCF-7) 21546767
chr12 52608819 52609602 ZNF143 GTRD no Epithelial (MCF-7) 108033683
chr12 52609121 52609777 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108033684
chr12 52609156 52609467 ZNF274 GTRD no Liver (HepG2) 108033685
chr12 52609158 52609818 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21546768
chr12 52609158 52609818 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108033686
chr12 52609173 52609188 RFX5 JASPAR yes 120929029
chr12 52609176 52609190 EBF1 JASPAR yes 120929030
chr12 52609180 52609200 RREB1 JASPAR yes 120929031
chr12 52609185 52609197 ZBTB7C JASPAR yes 120929032
Genes associated with rs527279398[chr12:52609187], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More