EnhancerDB
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  3. rs529174564[chr19:13956248]
Enhancers that have rs529174564[chr19:13956248]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 13941465 13967615 enh5016
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs529174564[chr19:13956248]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 13955441 13956851 ZNF143 GTRD no Epithelial (MCF-7) 21852243
chr19 13955441 13956851 ZNF143 GTRD no Epithelial (MCF-7) 108390188
chr19 13955468 13956409 ZNF143 GTRD no Epithelial (MCF-7) 21852244
chr19 13955468 13956409 ZNF143 GTRD no Epithelial (MCF-7) 108390189
chr19 13955484 13956974 ZNF143 GTRD no Epithelial (MCF-7) 21852246
chr19 13955484 13956974 ZNF143 GTRD no Epithelial (MCF-7) 108390191
chr19 13955534 13956387 ZNF143 GTRD no Epithelial (MCF-7) 21852250
chr19 13955534 13956387 ZNF143 GTRD no Epithelial (MCF-7) 108390195
chr19 13955562 13956783 ZNF143 GTRD no Epithelial (MCF-7) 21852252
chr19 13955562 13956783 ZNF143 GTRD no Epithelial (MCF-7) 108390197
chr19 13955589 13956352 ZNF143 GTRD no Epithelial (MCF-7) 21852253
chr19 13955589 13956352 ZNF143 GTRD no Epithelial (MCF-7) 108390198
chr19 13955589 13956537 TCF7L2 GTRD no Colon (HCT116) 21852254
chr19 13955589 13956537 TCF7L2 GTRD no Colon (HCT116) 108390199
chr19 13955593 13956452 TCF7L2 GTRD no Colon (HCT116) 21852255
chr19 13955654 13956287 ZNF143 GTRD no Epithelial (MCF-7) 21852256
chr19 13955657 13956865 ZNF143 GTRD no Epithelial (MCF-7) 21852257
chr19 13956231 13956617 TCF7L2 GTRD no Colon (HCT116) 21852259
chr19 13956235 13956248 NFKB1 JASPAR yes 112537485
chr19 13956235 13956248 NFKB2 JASPAR yes 112537486
Genes associated with rs529174564[chr19:13956248], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More