EnhancerDB
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  3. rs530020589[chr12:116893857]
Enhancers that have rs530020589[chr12:116893857]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 116889515 116899995 enh15029
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Pancreas Uterus Kidney Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Pancreas (Panc1) Prostate (PC-3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Lung Muscle (A673) Heart
Transcript factors that have rs530020589[chr12:116893857]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 116893433 116894052 TCF7L2 GTRD no Colon (HCT116) 21577048
chr12 116893433 116894052 TCF7L2 GTRD no Colon (HCT116) 108061665
chr12 116893443 116893899 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108061666
chr12 116893844 116893859 FOXP1 JASPAR yes 123997569
chr12 116893854 116893869 MEF2C JASPAR yes 123997570
chr12 116893855 116893867 POU3F1 JASPAR yes 123997571
chr12 116893855 116893867 POU3F2 JASPAR yes 123997572
chr12 116893855 116893868 POU3F3 JASPAR yes 123997573
chr12 116893856 116893868 POU2F1 JASPAR yes 123997574
Genes associated with rs530020589[chr12:116893857], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More