EnhancerDB
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  3. rs530259653[chr1:204294058]
Enhancers that have rs530259653[chr1:204294058]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 204280925 204295275 enh12578
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Lung (PC-9) Stomach Placenta Colon (HCT116) Peripheral Blood (MM.1S) Muscle (Myoblast) Breast Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs530259653[chr1:204294058]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 204294043 204294059 POU4F2 JASPAR yes 34692880
chr1 204294043 204294059 POU4F3 JASPAR yes 34692881
chr1 204294044 204294059 FOXA1 JASPAR yes 34692883
chr1 204294045 204294059 POU4F1 JASPAR yes 34692885
chr1 204294045 204294060 FOXP1 JASPAR yes 34692886
chr1 204294045 204294060 HNF1A JASPAR yes 34692887
chr1 204294046 204294058 FOXC2 JASPAR yes 34692888
chr1 204294046 204294060 ONECUT2 JASPAR yes 34692889
chr1 204294046 204294060 ONECUT3 JASPAR yes 34692890
chr1 204294047 204294058 FOXB1 JASPAR yes 34692891
chr1 204294047 204294058 FOXC1 JASPAR yes 34692892
chr1 204294047 204294058 PROP1 JASPAR yes 34692893
chr1 204294048 204294063 FOXA1 JASPAR yes 34692895
chr1 204294049 204294061 FOXI1 JASPAR yes 34692896
chr1 204294049 204294064 FOXP1 JASPAR yes 34692897
chr1 204294050 204294062 FOXC2 JASPAR yes 34692898
chr1 204294050 204294064 FOXF2 JASPAR yes 34692899
chr1 204294050 204294064 ONECUT2 JASPAR yes 34692900
chr1 204294050 204294064 ONECUT3 JASPAR yes 34692901
chr1 204294051 204294062 FOXB1 JASPAR yes 34692902
chr1 204294051 204294062 FOXC1 JASPAR yes 34692903
chr1 204294052 204294067 MEF2A JASPAR yes 34692905
chr1 204294053 204294068 MEF2C JASPAR yes 34692906
chr1 204294056 204294060 YY1 TRANSFAC yes 34692907
Genes associated with rs530259653[chr1:204294058], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More