EnhancerDB
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  3. rs533746541[chr17:62953983]
Enhancers that have rs533746541[chr17:62953983]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 62953485 63000035 enh4531
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs533746541[chr17:62953983]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 62952883 62958112 ZNF143 GTRD no Epithelial (MCF-7) 21779990
chr17 62953667 62955028 ZNF143 GTRD no Epithelial (MCF-7) 21779991
chr17 62953744 62957520 ZNF143 GTRD no Epithelial (MCF-7) 21779992
chr17 62953814 62954393 ZNF143 GTRD no Epithelial (MCF-7) 21779993
chr17 62953868 62954275 ZNF274 GTRD no Bone Marrow (K562) 21779994
chr17 62953894 62954195 ZBTB33 GTRD no Lung (A549) 21779995
chr17 62953903 62954306 ZNF274 GTRD no Cervix (HeLa-S3) 21779996
chr17 62953965 62953985 RREB1 JASPAR yes 55330885
chr17 62953967 62953987 RREB1 JASPAR yes 55330886
chr17 62953968 62953988 RREB1 JASPAR yes 55330887
chr17 62953972 62953992 RREB1 JASPAR yes 55330888
chr17 62953974 62953989 FOXA1 JASPAR yes 55330889
chr17 62953975 62953987 FOXI1 JASPAR yes 55330890
chr17 62953976 62953988 FOXC2 JASPAR yes 55330891
chr17 62953978 62953989 FOXA1 JASPAR yes 55330892
chr17 62953978 62953999 IRF1 JASPAR yes 55330893
chr17 62953980 62953995 STAT2 JASPAR yes 55330894
chr17 62953982 62953994 IRF1 JASPAR yes 55330895
Genes associated with rs533746541[chr17:62953983], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More