EnhancerDB
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  3. rs533848174[chr1:54808280]
Enhancers that have rs533848174[chr1:54808280]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 54786534 54810675 enh369
Brain (SK-N-SH) Prostate (RWPE1) Stomach Muscle (A673) Uterus Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Neural Stem Cells (H9) Heart
chr1 54808081 54808294 vista1651
VISTA
Transcript factors that have rs533848174[chr1:54808280]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 54807223 54809382 AR GTRD no Prostate (PC-3) 107804791
chr1 54808026 54809572 ZNF274 GTRD no Bone Marrow (K562) 107804792
chr1 54808037 54809186 ZBTB33 GTRD no Lung (A549) 107804793
chr1 54808098 54809563 ZNF274 GTRD no Bone Marrow (K562) 107804794
chr1 54808129 54809118 ZBTB33 GTRD no Lung (A549) 107804795
chr1 54808131 54808387 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107804796
chr1 54808135 54809387 ZNF274 GTRD no Bone Marrow (K562) 107804797
chr1 54808194 54809603 ZNF143 GTRD no Epithelial (MCF-7) 107804798
chr1 54808204 54809561 ZNF274 GTRD no Cervix (HeLa-S3) 107804799
chr1 54808240 54809312 ZNF274 GTRD no Liver (HepG2) 107804800
chr1 54808248 54809102 TCF7L2 GTRD no Colon (HCT116) 107804801
chr1 54808261 54809364 ZNF274 GTRD no Bone Marrow (K562) 107804802
chr1 54808262 54808931 ZBTB33 GTRD no Lung (A549) 107804803
chr1 54808266 54809325 ZNF143 GTRD no Epithelial (MCF-7) 107804804
chr1 54808268 54808281 SMAD2 JASPAR yes 28975690
chr1 54808268 54808281 SMAD2 JASPAR yes 118292584
chr1 54808280 54809386 ZNF143 GTRD no Epithelial (MCF-7) 107804805
Genes associated with rs533848174[chr1:54808280], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More