EnhancerDB
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  3. rs534200834[chr1:200990139]
Enhancers that have rs534200834[chr1:200990139]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 200981245 200991765 enh12515
Bone Marrow (K562) Skin (Keratinocyte) Cervix (HeLa-S3) Large Intestine Blood (T-cell) Esophagus Lung (A549) Blood (GM12878) Placenta Peripheral Blood (MM.1S) Lung (PC-9) Muscle (Myotube) Thymus Stomach
chr1 200990087 200990628 vista4534
VISTA
Transcript factors that have rs534200834[chr1:200990139]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 200987964 200991849 ZNF143 GTRD no Epithelial (MCF-7) 107855846
chr1 200989179 200992906 ZNF143 GTRD no Epithelial (MCF-7) 107855847
chr1 200989245 200990824 ZNF143 GTRD no Epithelial (MCF-7) 107855848
chr1 200989343 200991781 ZNF143 GTRD no Epithelial (MCF-7) 107855849
chr1 200989410 200990448 ZNF274 GTRD no Bone Marrow (K562) 21363769
chr1 200989410 200990448 ZNF274 GTRD no Bone Marrow (K562) 107855850
chr1 200989625 200991847 ZNF143 GTRD no Epithelial (MCF-7) 107855851
chr1 200989643 200990497 TCF7L2 GTRD no Colon (HCT116) 107855852
chr1 200989762 200990414 TCF7L2 GTRD no Colon (HCT116) 107855853
chr1 200989801 200990549 TCF7L2 GTRD no Colon (HCT116) 107855854
chr1 200989938 200990497 TCF7L2 GTRD no Colon (HCT116) 107855855
chr1 200990058 200990462 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21363770
chr1 200990058 200990462 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107855856
chr1 200990072 200990506 CTCF UCSC Txn Factor no Conserved 107855857
chr1 200990112 200990482 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21363771
chr1 200990112 200990482 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107855858
chr1 200990115 200990460 ZNF274 GTRD no Bone Marrow (K562) 21363772
chr1 200990115 200990460 ZNF274 GTRD no Bone Marrow (K562) 107855859
chr1 200990117 200990477 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21363773
chr1 200990117 200990477 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107855860
chr1 200990126 200990516 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21363774
chr1 200990126 200990516 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107855861
chr1 200990128 200990368 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21363775
chr1 200990128 200990368 EGR1 UCSC Txn Factor no Conserved 107855862
chr1 200990128 200990368 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107855863
chr1 200990131 200990143 TFAP2A JASPAR yes 34478635
chr1 200990131 200990143 TFAP2B JASPAR yes 34478636
chr1 200990131 200990143 TFAP2C JASPAR yes 34478637
chr1 200990131 200990143 TFAP2A JASPAR yes 118431068
chr1 200990131 200990143 TFAP2B JASPAR yes 118431069
chr1 200990131 200990143 TFAP2C JASPAR yes 118431070
chr1 200990131 200990146 TFAP2A JASPAR yes 34478638
chr1 200990131 200990146 TFAP2C JASPAR yes 34478639
chr1 200990131 200990146 TFAP2A JASPAR yes 118431071
chr1 200990131 200990146 TFAP2C JASPAR yes 118431072
chr1 200990132 200990141 TFAP2A JASPAR yes 34478640
chr1 200990132 200990141 TFAP2A JASPAR yes 118431073
chr1 200990133 200990142 TFAP2A JASPAR yes 34478641
chr1 200990133 200990142 TFAP2A JASPAR yes 118431074
Genes associated with rs534200834[chr1:200990139], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More