EnhancerDB
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  3. rs534409517[chr12:52610794]
Enhancers that have rs534409517[chr12:52610794]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52591245 52620175 enh14727
Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs534409517[chr12:52610794]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52610426 52611030 TCF7L2 GTRD no Colon (HCT116) 21546810
chr12 52610459 52611030 ZNF143 GTRD no Epithelial (MCF-7) 21546811
chr12 52610465 52610999 TCF7L2 GTRD no Colon (HCT116) 21546812
chr12 52610499 52611032 ZNF143 GTRD no Epithelial (MCF-7) 21546813
chr12 52610532 52611436 ZNF143 GTRD no Epithelial (MCF-7) 21546814
chr12 52610569 52610856 ZNF143 GTRD no Epithelial (MCF-7) 21546815
chr12 52610779 52610797 ESR1 JASPAR yes 120929284
chr12 52610780 52610794 NR2F1 JASPAR yes 120929285
chr12 52610789 52610803 ZIC1 JASPAR yes 120929286
chr12 52610789 52610804 ZIC3 JASPAR yes 120929287
Genes associated with rs534409517[chr12:52610794], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More