EnhancerDB
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  3. rs534534559[chr1:54806810]
Enhancers that have rs534534559[chr1:54806810]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 54786534 54810675 enh369
Brain (SK-N-SH) Prostate (RWPE1) Stomach Muscle (A673) Uterus Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Neural Stem Cells (H9) Heart
Transcript factors that have rs534534559[chr1:54806810]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 54806663 54808143 TCF7L2 GTRD no Colon (HCT116) 107804789
chr1 54806737 54808119 TCF7L2 GTRD no Colon (HCT116) 107804790
chr1 54806804 54806814 GSX1 JASPAR yes 28975468
chr1 54806804 54806814 GSX2 JASPAR yes 28975469
chr1 54806804 54806815 HOXA10 JASPAR yes 28975470
chr1 54806805 54806813 BARX1 JASPAR yes 28975471
chr1 54806805 54806813 BSX JASPAR yes 28975472
chr1 54806805 54806813 ISL2 JASPAR yes 28975473
chr1 54806805 54806813 LMX1B JASPAR yes 28975474
chr1 54806805 54806813 MSX1 JASPAR yes 28975475
chr1 54806805 54806813 MSX2 JASPAR yes 28975476
chr1 54806805 54806815 HOXB13 JASPAR yes 28975477
chr1 54806805 54806815 HOXD13 JASPAR yes 28975478
Genes associated with rs534534559[chr1:54806810], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More